Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary material 1 from: Cheng S, Chan K-M, Ishak S-F, Khoo V, Chew MY (2017) Elucidating food plants of the aggregative, synchronously flashing Southeast Asian firefly, Pteroptyx tener Olivier (Coleoptera, Lampyridae). BioRisk 12: 25-39. https://doi.org/10.3897/biorisk.12.14061

Cheng, Shawn
Chan, Kar-Men
Ishak, Shah-Fadir
Khoo, V.
Chew, M.Y.

August 2017

Supporting Information S1. 16S ribosomal RNA sequence alignment : Data type: molecular dat

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Breeschoten, Thijmen
Schranz, M. Eric
H. Poelman, Erik
Simon, Sabrina
Biosystematics Group, Wageningen University & Research

September 2022

This dataset contains all supplementary datafiles of the manuscript: “Family dinner: Transcriptional...

Supplementary datafiles of - "Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked Across Lepidoptera?

Breeschoten, Thijmen
Simon, Sabrina
Schranz, Eric
van der Linden, Corné
Ros, Vera

January 2022

This dataset contains all supplementary datafiles for paper entitled: Expanding the Menu: Are Polyph...

Family dinner: Transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species

Breeschoten, Thijmen
Schranz, M.E.
Poelman, Erik H.
Simon, Sabrina

January 2022

Polyphagous insects often show specialization in feeding on different host plants in terms of surviv...

Supplementary datafiles of - "Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control"

Breeschoten, Thijmen
Simon, Sabrina
Jansen, Hans
Dirks, Ron
Schranz, Eric
Ros, Vera

January 2022

This dataset contains all supplementary datafiles paper entitled: “Genome and transcriptome analysis...

Additional file 4: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S6. Detailed information for DE genes displaying significant homology to genes described in vi...

Additional file 3: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S4. Detailed information for all DE genes: mean normalized counts per experimental set-up, sig...

Additional file 2: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S3. Common and private DE genes in analyses with and without the inclusion of the one outlier ...

Additional file 5: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S7. Detailed information for DE genes displaying significant sequence similarity to genes prev...

Additional file 3: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan Reimegård (110489)
Sören Nylin (148408)
Niklas Janz (148395)

March 2016

Is a table listing the transcripts under the “oxidoreductase” GO category in the fat body of caterpi...

Supplementary File 1 (Host families tree)

Navaud, Olivier
Barbacci, Adelin
Taylor, Andrew
Clarkson, John P.
Raffaele, Sylvain

February 2018

Phylogenetic tree of host plant families used for co-phylogenetic analyses in this work (newick form...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Misof, Bernhard
Liu, Shanlin
Meusemann, Karen
Peters, Ralph S.
Donath, Alexander
Mayer, Christoph
Frandsen, Paul B.
Ware, Jessica
Flouri, Tomas
Beutel, Rolf G.
Niehuis, Oliver
Petersen, Malte
Izquierdo-Carrasco, Fernando
Wappler, Torsten
Rust, Jes
Aberer, Andre J.
Aspöck, Ulrike
Aspöck, Horst
Bartel, Daniela
Blanke, Alexander
Berger, Simon
Böhm, Alexander
Buckley, Thomas
Calcott, Brett
Chen, Junqing
Friedrich, Frank
Fukui, Makiko
Fujita, Mari
Greve, Carola
Grobe, Peter
Gu, Shengchang
Huang, Ying
Jermiin, Lars S.
Kawahara, Akito Y.
Krogmann, Lars
Kubiak, Martin
Lanfear, Robert
Letsch, Harald
Li, Yiyuan
Li, Zhenyu
Li, Jiguang
Lu, Haorong
Machida, Ryuichiro
Mashimo, Yuta
Kapli, Pashalia
McKenna, Duane D.
Meng, Guanliang
Nakagaki, Yasutaka
Navarrete-Heredia, José Luis
Ott, Michael
Ou, Yanxiang
Pass, Günther
Podsiadlowski, Lars
Pohl, Hans
von Reumont, Björn M
Schütte, Kai
Sekiya, Kaoru
Shimizu, Shota
Slipinski, Adam
Stamatakis, Alexandros
Song, Wenhui
Su, Xu
Szucsich, Nikolaus U.
Tan, Meihua
Tan, Xuemei
Tang, Min
Tang, Jingbo
Timelthaler, Gerald
Tomizuka, Shigekazu
Trautwein, Michelle
Tong, Xiaoli
Uchifune, Toshiki
Walzl, Manfred G.
Wiegmann, Brian M.
Wilbrandt, Jeanne
Wipfler, Benjamin
Wong, Thomas KF
Wu, Qiong
Wu, Gengxiong
Xie, Yinlong
Yang, Shenzhou
Yang, Qing
Yeates, David K.
Yoshizawa, Kazunori
Zhang, Qing
Zhang, Rui
Zhang, Wenwei
Zhang, Yunhui
Zhao, Jing
Zhou, Chengran
Zhou, Lili
Ziesmann, Tanja
Zou, Shijie
Li, Yingrui
Xu, Xun
Zhang, Yong
Yang, Huanming
Wang, Jian
Wang, Jun
Kjer, Karl M.
Zhou, Xin

November 2014

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Dataset for the manuscript: Phylogenetic and functional constraints of plant facilitation rewiring. ECOLOGY

Sánchez Martín, Ricardo
Verdú, Miguel
Montesinos-Navarro, Alicia

August 2022

The following directory contains the data necessary to replicate the results obtained in the manusc...

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary material 1 from: Cheng S, Chan K-M, Ishak S-F, Khoo V, Chew MY (2017) Elucidating food plants of the aggregative, synchronously flashing Southeast Asian firefly, Pteroptyx tener Olivier (Coleoptera, Lampyridae). BioRisk 12: 25-39. https://doi.org/10.3897/biorisk.12.14061

Cheng, Shawn
Chan, Kar-Men
Ishak, Shah-Fadir
Khoo, V.
Chew, M.Y.

August 2017

Supporting Information S1. 16S ribosomal RNA sequence alignment : Data type: molecular dat

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Breeschoten, Thijmen
Schranz, M. Eric
H. Poelman, Erik
Simon, Sabrina
Biosystematics Group, Wageningen University & Research

September 2022

This dataset contains all supplementary datafiles of the manuscript: “Family dinner: Transcriptional...

Supplementary datafiles of - "Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked Across Lepidoptera?

Breeschoten, Thijmen
Simon, Sabrina
Schranz, Eric
van der Linden, Corné
Ros, Vera

January 2022

This dataset contains all supplementary datafiles for paper entitled: Expanding the Menu: Are Polyph...

Family dinner: Transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species

Breeschoten, Thijmen
Schranz, M.E.
Poelman, Erik H.
Simon, Sabrina

January 2022

Polyphagous insects often show specialization in feeding on different host plants in terms of surviv...

Supplementary datafiles of - "Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control"

Breeschoten, Thijmen
Simon, Sabrina
Jansen, Hans
Dirks, Ron
Schranz, Eric
Ros, Vera

January 2022

This dataset contains all supplementary datafiles paper entitled: “Genome and transcriptome analysis...

Additional file 4: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S6. Detailed information for DE genes displaying significant homology to genes described in vi...

Additional file 3: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S4. Detailed information for all DE genes: mean normalized counts per experimental set-up, sig...

Additional file 2: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S3. Common and private DE genes in analyses with and without the inclusion of the one outlier ...

Additional file 5: of Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence

M. Orsucci (5118560)
P. Audiot (5118542)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
B. Gschloessl (5118551)
S. Rialle (3768544)
D. Severac (5118545)
D. Bourguet (5118539)
R. Streiff (5118548)

April 2018

Table S7. Detailed information for DE genes displaying significant sequence similarity to genes prev...

Additional file 3: of Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Maria Celorio-Mancera (3402275)
Christopher Wheat (3295143)
Mikael Huss (377397)
Francesco Vezzi (107361)
Ramprasad Neethiraj (383691)
Johan Reimegård (110489)
Sören Nylin (148408)
Niklas Janz (148395)

March 2016

Is a table listing the transcripts under the “oxidoreductase” GO category in the fat body of caterpi...

Supplementary File 1 (Host families tree)

Navaud, Olivier
Barbacci, Adelin
Taylor, Andrew
Clarkson, John P.
Raffaele, Sylvain

February 2018

Phylogenetic tree of host plant families used for co-phylogenetic analyses in this work (newick form...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Misof, Bernhard
Liu, Shanlin
Meusemann, Karen
Peters, Ralph S.
Donath, Alexander
Mayer, Christoph
Frandsen, Paul B.
Ware, Jessica
Flouri, Tomas
Beutel, Rolf G.
Niehuis, Oliver
Petersen, Malte
Izquierdo-Carrasco, Fernando
Wappler, Torsten
Rust, Jes
Aberer, Andre J.
Aspöck, Ulrike
Aspöck, Horst
Bartel, Daniela
Blanke, Alexander
Berger, Simon
Böhm, Alexander
Buckley, Thomas
Calcott, Brett
Chen, Junqing
Friedrich, Frank
Fukui, Makiko
Fujita, Mari
Greve, Carola
Grobe, Peter
Gu, Shengchang
Huang, Ying
Jermiin, Lars S.
Kawahara, Akito Y.
Krogmann, Lars
Kubiak, Martin
Lanfear, Robert
Letsch, Harald
Li, Yiyuan
Li, Zhenyu
Li, Jiguang
Lu, Haorong
Machida, Ryuichiro
Mashimo, Yuta
Kapli, Pashalia
McKenna, Duane D.
Meng, Guanliang
Nakagaki, Yasutaka
Navarrete-Heredia, José Luis
Ott, Michael
Ou, Yanxiang
Pass, Günther
Podsiadlowski, Lars
Pohl, Hans
von Reumont, Björn M
Schütte, Kai
Sekiya, Kaoru
Shimizu, Shota
Slipinski, Adam
Stamatakis, Alexandros
Song, Wenhui
Su, Xu
Szucsich, Nikolaus U.
Tan, Meihua
Tan, Xuemei
Tang, Min
Tang, Jingbo
Timelthaler, Gerald
Tomizuka, Shigekazu
Trautwein, Michelle
Tong, Xiaoli
Uchifune, Toshiki
Walzl, Manfred G.
Wiegmann, Brian M.
Wilbrandt, Jeanne
Wipfler, Benjamin
Wong, Thomas KF
Wu, Qiong
Wu, Gengxiong
Xie, Yinlong
Yang, Shenzhou
Yang, Qing
Yeates, David K.
Yoshizawa, Kazunori
Zhang, Qing
Zhang, Rui
Zhang, Wenwei
Zhang, Yunhui
Zhao, Jing
Zhou, Chengran
Zhou, Lili
Ziesmann, Tanja
Zou, Shijie
Li, Yingrui
Xu, Xun
Zhang, Yong
Yang, Huanming
Wang, Jian
Wang, Jun
Kjer, Karl M.
Zhou, Xin

November 2014

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Dataset for the manuscript: Phylogenetic and functional constraints of plant facilitation rewiring. ECOLOGY

Sánchez Martín, Ricardo
Verdú, Miguel
Montesinos-Navarro, Alicia

August 2022

The following directory contains the data necessary to replicate the results obtained in the manusc...

Additional file 1: of Transcriptomic response of female adult moths to host and non-host plants in two closely related species

M. Orsucci (5118560)
P. Audiot (5118542)
S. Nidelet (5776439)
F. Dorkeld (5118563)
A. Pommier (5118557)
M. Vabre (5118554)
D. Severac (5118545)
M. Rohmer (5776448)
B. Gschloessl (5118551)
R. Streiff (5118548)

September 2018

Box S1. Experimental framework of RNAseq sequencing: material, methods and main results on the behav...

Supplementary material 1 from: Cheng S, Chan K-M, Ishak S-F, Khoo V, Chew MY (2017) Elucidating food plants of the aggregative, synchronously flashing Southeast Asian firefly, Pteroptyx tener Olivier (Coleoptera, Lampyridae). BioRisk 12: 25-39. https://doi.org/10.3897/biorisk.12.14061

Cheng, Shawn
Chan, Kar-Men
Ishak, Shah-Fadir
Khoo, V.
Chew, M.Y.

August 2017

Supporting Information S1. 16S ribosomal RNA sequence alignment : Data type: molecular dat

Host-use data and phylogenies for plant-feeding Hemiptera and Lepidoptera

Daniel A. Peterson (146145)
Nate B. Hardy (3241494)
Benjamin B. Normark (3241497)

October 2016

We have included host-use information (in link form) for plant-feeding Hemiptera and Lepidoptera. Th...

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Abstract

Extracted data

Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"

Abstract

Extracted data

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